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Journal of Zhejiang University SCIENCE B
ISSN 1673-1581(Print), 1862-1783(Online), Monthly
2021 Vol.22 No.9 P.757-766
Insertion/deletion variants within the IGF2BP2 gene identified in reported genome-wide selective sweep analysis reveal a correlation with goat litter size
Abstract: Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2, also called IMP2) plays an essential role in the development and maturation of germ cells and embryos and is a candidate gene for goat litter size, based on a previous genome-wide selective sweep analysis. In this study, the mRNA expression level of IGF2BP2 was found to be significantly higher in a single-lamb group than in a multi-lamb group. Insertions/deletions (indels) within the goat IGF2BP2 gene, including P4-Ins-13bp and P5-Del-12bp, were verified in 918 Shaanbei White Cashmere (SBWC) female goats. The minor allelic frequencies (MAFs) of P4-Ins-13bp and P5-Del-12bp loci were 0.349 and 0.295, respectively. Analysis using the Chi-square (χ2) test showed that the genotype (χ2=14.479, P=0.006) distribution of P4-Ins-13bp was significantly different between the single-lamb and multi-lamb groups. Correlation analysis demonstrated that P4-Ins-13bp was significantly associated with goat litter size (P=0.022), and individual goats with the homozygous deletion/deletion (DD) genotype produced more litters than other goats. Therefore, considered as a potential molecular marker significantly related to lambing traits, the P4-Ins-13bp mutation of the goat IGF2BP2 gene can be used in goat breeding with practical molecular marker-assisted selection (MAS) to optimize female reproduction and improve economic efficiency in the goat industry.
Key words: Goat; Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2); Litter size; Indel; Marker-assisted selection (MAS)
创新点:首次筛选、验证山羊IGF2BP2基因的InDel位点,确定其与山羊产羔性状的相关性及作用,为山羊经济性状改良及新品种培育提供理论依据。
方法:采用实时荧光定量聚合酶链式反应(qRT-PCR)方法分析IGF2BP2在单羔组和多羔组中的表达水平;通过PCR扩增-琼脂糖凝胶电泳在918只陕北白绒母山羊中鉴定IGF2BP2基因P4-Ins-13bp和P5-Del-12bp缺失/插入位点基因型,并进行测序以验证突变;利用SHEsis平台分析两个位点的连锁不平衡;采用方差分析(ANOVA)和χ2检验分析山羊IGF2BP2基因变异与产羔数的关系;并利用在线数据库预测转录因子(TF)和突变区域序列的结合。
结论:本研究发现,IGF2BP2的mRNA表达水平在单羔组明显高于多羔组。在陕北白绒母山羊中验证了IGF2BP2基因内的插入/缺失(indels),包括P4-Ins-13bp和P5-Del-12bp。χ2检验表明,P4-Ins-13bp基因型(χ2=14.479,P=0.006)在单羔和多羔组间分布差异显著;相关分析表明,P4-Ins-13bp与山羊产仔数显着相关(P=0.022),具有缺失/缺失(DD)基因型的山羊个体产仔数高于其他山羊。因此,IGF2BP2基因的P4-Ins-13bp突变可作为一种潜在的与繁殖性状显著相关的分子标记,以优化母羊繁殖力,提高山羊产业的经济效益。
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DOI:
10.1631/jzus.B2100079
CLC number:
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On-line Access:
2024-08-27
Received:
2023-10-17
Revision Accepted:
2024-05-08
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