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Journal of Zhejiang University SCIENCE B
ISSN 1673-1581(Print), 1862-1783(Online), Monthly
2025 Vol.26 No.4 P.371-392
Single-cell and spatial transcriptomic analysis reveals that an immune cell-related signature could predict clinical outcomes for microsatellite-stable colorectal cancer patients receiving immunotherapy
Abstract: Recent data suggest that vascular endothelial growth factor receptor inhibitor (VEGFRi) can enhance the anti-tumor activity of the anti-programmed cell death-1 (anti-PD-1) antibody in colorectal cancer (CRC) with microsatellite stability (MSS). However, the comparison between this combination and standard third-line VEGFRi treatment is not performed, and reliable biomarkers are still lacking. We retrospectively enrolled MSS CRC patients receiving anti-PD-1 antibody plus VEGFRi (combination group, n=54) or VEGFRi alone (VEGFRi group, n=32), and their efficacy and safety were evaluated. We additionally examined the immune characteristics of the MSS CRC tumor microenvironment (TME) through single-cell and spatial transcriptomic data, and an MSS CRC immune cell-related signature (MCICRS) that can be used to predict the clinical outcomes of MSS CRC patients receiving immunotherapy was developed and validated in our in-house cohort. Compared with VEGFRi alone, the combination of anti-PD-1 antibody and VEGFRi exhibited a prolonged survival benefit (median progression-free survival: 4.4 vs. 2.0 months, P=0.0024; median overall survival: 10.2 vs. 5.2 months, P=0.0038) and a similar adverse event incidence. Through single-cell and spatial transcriptomic analysis, we determined ten MSS CRC-enriched immune cell types and their spatial distribution, including naive CD4+ T, regulatory CD4+ T, CD4+ Th17, exhausted CD8+ T, cytotoxic CD8+ T, proliferated CD8+ T, natural killer (NK) cells, plasma, and classical and intermediate monocytes. Based on a systemic meta-analysis and ten machine learning algorithms, we obtained MCICRS, an independent risk factor for the prognosis of MSS CRC patients. Further analyses demonstrated that the low-MCICRS group presented a higher immune cell infiltration and immune-related pathway activation, and hence a significant relation with the superior efficacy of pan-cancer immunotherapy. More importantly, the predictive value of MCICRS in MSS CRC patients receiving immunotherapy was also validated with an in-house cohort. Anti-PD-1 antibody combined with VEGFRi presented an improved clinical benefit in MSS CRC with manageable toxicity. MCICRS could serve as a robust and promising tool to predict clinical outcomes for individual MSS CRC patients receiving immunotherapy.
Key words: Colorectal cancer (CRC); Microsatellite stability (MSS); Immunotherapy; Single-cell RNA sequencing (scRNA-seq); Spatial transcriptomics
1浙江大学医学院附属邵逸夫医院检验科,中国杭州市,310016
2浙江大学医学院附属邵逸夫医院肿瘤内科,中国杭州市,310016
3浙江省医学精准检验与监测研究重点实验室,中国杭州市,310016
4永康市中医院西城分院,中国金华市,321300
摘要:近期研究表明,血管内皮生长因子受体抑制剂(VEGFRi)可以增强程序性死亡受体1(PD-1)抗体对微卫星稳定(MSS)结直肠癌(CRC)的抗肿瘤活性。然而,与标准三线VEGFRi治疗相比,这种联合治疗的疗效尚未明确,且目前缺乏可靠的生物标志物。本研究中,我们回顾性纳入了接受PD-1抗体联合VEGFRi(联合组,n=54)或单独VEGFRi(VEGFRi组,n=32)治疗的MSS CRC患者,并评估了其疗效和安全性。我们通过单细胞和空间转录组数据进一步研究了MSS CRC肿瘤微环境(TME)的免疫特征,构建了一个预测接受免疫治疗的MSS CRC患者临床结局的MSS CRC免疫细胞相关特征(MCICRS),并在内部队列中对其进行验证。研究发现,与单独VEGFRi治疗相比,PD-1抗体联合VEGFRi治疗能显著延长患者的生存期(中位无进展生存期:4.4个月 vs. 2.0个月,P=0.0024;中位总生存期:10.2个月 vs. 5.2个月,P=0.0038),且两组间不良事件的发生率相当。进一步通过单细胞和空间转录组分析,我们确定了10种MSS CRC富集的免疫细胞类型及其空间分布,包括幼稚CD4+ T细胞、调节性CD4+ T细胞、CD4+ Th17细胞、耗竭CD8+ T细胞、细胞毒性CD8+ T细胞、增殖CD8+ T细胞、自然杀伤(NK)细胞、浆细胞和经典/中间型单核细胞。基于meta分析和10种机器学习算法,我们构建了MCICRS,其是一个独立的MSS CRC患者的预后风险因素。通过进一步分析,MCICRS低风险组患者表现出更高的免疫细胞浸润和免疫相关通路激活,同时与泛癌免疫治疗的客观反应率和无进展生存有显著关联。最后,MCICRS在MSS CRC接受免疫治疗的预测价值也在内部队列中得到了验证。综上所述,PD-1抗体联合VEGFRi可以改善MSS CRC的临床结局且可控制毒性,同时MCICRS可以作为一个强大且有前景的工具,用于预测接受免疫治疗的MSS CRC患者的临床结局。
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DOI:
10.1631/jzus.B2300679
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On-line Access:
2025-04-23
Received:
2023-09-21
Revision Accepted:
2024-01-25
Crosschecked:
2025-04-24