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Journal of Zhejiang University SCIENCE B
ISSN 1673-1581(Print), 1862-1783(Online), Monthly
2025 Vol.26 No.5 P.409-420
Recent advances in antibody optimization based on deep learning methods
Abstract: Antibodies currently comprise the predominant treatment modality for a variety of diseases; therefore, optimizing their properties rapidly and efficiently is an indispensable step in antibody-based drug development. Inspired by the great success of artificial intelligence-based algorithms, especially deep learning-based methods in the field of biology, various computational methods have been introduced into antibody optimization to reduce costs and increase the success rate of lead candidate generation and optimization. Herein, we briefly review recent progress in deep learning-based antibody optimization, focusing on the available datasets and algorithm input data types that are crucial for constructing appropriate deep learning models. Furthermore, we discuss the current challenges and potential solutions for the future development of general-purpose deep learning algorithms in antibody optimization.
Key words: Deep learning; Antibody optimization; Available dataset; Input data type
1浙江大学生命科学学院定量生物中心, 中国杭州市, 310058
2浙江大学医学院附属第一医院肝胆胰外科, 中国杭州市, 310058
摘要:当前,抗体已成为多种疾病治疗的重要工具,快速高效地优化其理化性质是抗体药物开发过程中的关键环节。随着人工智能技术发展,特别是深度学习方法在生物学领域中取得的显著突破,各类计算方法被广泛应用于抗体优化环节中,以降低开发成本并提升抗体优化的成功率。本文对近年来基于深度学习的抗体优化策略进行综述,重点探讨了深度学习模型构建中关键的数据集资源及算法输入的数据类型;分析了当前深度学习算法在抗体优化应用中所面临的主要挑战;展望了未来通用型深度学习算法在该领域的发展方向及潜在的解决策略。
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DOI:
10.1631/jzus.B2400387
CLC number:
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On-line Access:
2025-05-28
Received:
2024-07-24
Revision Accepted:
2024-11-09
Crosschecked:
2025-05-29