CLC number: R394.5
On-line Access: 2024-08-27
Received: 2023-10-17
Revision Accepted: 2024-05-08
Crosschecked: 2016-04-15
Cited: 5
Clicked: 5260
Yu-xin Guo, Jian-gang Chen, Yan Wang, Jiang-wei Yan, Jing Chen, Tian-hua Yao, Li-ping Zhang, Guang Yang, Hao-tian Meng, Yu-dang Zhang, Ting Mei, Yao-shun Liu, Qian Dong, Bo-feng Zhu. Genetic polymorphism analyses of a novel panel of 19 X-STR loci in the Chinese Uygur ethnic minority[J]. Journal of Zhejiang University Science B, 2016, 17(5): 367-374.
@article{title="Genetic polymorphism analyses of a novel panel of 19 X-STR loci in the Chinese Uygur ethnic minority",
author="Yu-xin Guo, Jian-gang Chen, Yan Wang, Jiang-wei Yan, Jing Chen, Tian-hua Yao, Li-ping Zhang, Guang Yang, Hao-tian Meng, Yu-dang Zhang, Ting Mei, Yao-shun Liu, Qian Dong, Bo-feng Zhu",
journal="Journal of Zhejiang University Science B",
volume="17",
number="5",
pages="367-374",
year="2016",
publisher="Zhejiang University Press & Springer",
doi="10.1631/jzus.B1500228"
}
%0 Journal Article
%T Genetic polymorphism analyses of a novel panel of 19 X-STR loci in the Chinese Uygur ethnic minority
%A Yu-xin Guo
%A Jian-gang Chen
%A Yan Wang
%A Jiang-wei Yan
%A Jing Chen
%A Tian-hua Yao
%A Li-ping Zhang
%A Guang Yang
%A Hao-tian Meng
%A Yu-dang Zhang
%A Ting Mei
%A Yao-shun Liu
%A Qian Dong
%A Bo-feng Zhu
%J Journal of Zhejiang University SCIENCE B
%V 17
%N 5
%P 367-374
%@ 1673-1581
%D 2016
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.B1500228
TY - JOUR
T1 - Genetic polymorphism analyses of a novel panel of 19 X-STR loci in the Chinese Uygur ethnic minority
A1 - Yu-xin Guo
A1 - Jian-gang Chen
A1 - Yan Wang
A1 - Jiang-wei Yan
A1 - Jing Chen
A1 - Tian-hua Yao
A1 - Li-ping Zhang
A1 - Guang Yang
A1 - Hao-tian Meng
A1 - Yu-dang Zhang
A1 - Ting Mei
A1 - Yao-shun Liu
A1 - Qian Dong
A1 - Bo-feng Zhu
J0 - Journal of Zhejiang University Science B
VL - 17
IS - 5
SP - 367
EP - 374
%@ 1673-1581
Y1 - 2016
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.B1500228
Abstract: The population genetic data and forensic parameters of 19 x-chromosome short tandem repeat (X-STR) loci in Chinese uygur ethnic minority are presented. These loci were detected in a sample of 233 (94 males and 139 females) unrelated healthy individuals. We observed 238 alleles at the 19 X-STR loci, with the corresponding gene frequencies spanning the range from 0.0021 to 0.5644. After Bonferroni correction (P>0.0026), there were no significant deviations from Hardy-Weinberg equilibrium. The cumulative power of discrimination in females and males, and the probability of exclusion of the 19 X-STR loci were 0.999 999 999 999 999 999 998 091, 0.999 999 999 999 966, and 0.999 999 986 35, respectively. The cumulative mean exclusion chance was 0.999 999 992 849 in deficiency cases, 0.999 999 999 999 628 in normal trios, and 0.999 999 998 722 in duo cases. The high value of the forensic parameters mentioned above revealed that the novel panel of 19 loci had important values for forensic applications in the uygur group.
[1]Chen, M.Y., Ho, C.W., Pu, C.E., et al., 2014. Genetic polymorphisms of 12 X-chromosomal STR loci in Taiwanese individuals and likelihood ratio calculations applied to case studies of blood relationships. Electrophoresis, 35(12-13):1912-1920.
[2]Deng, Y.J., Mi, Y., Shen, C.M., et al., 2013. Polymorphic analysis of 21 new STR loci in Chinese Uigur group. Forensic Sci. Int. Genet., 7(3):e97-e98.
[3]Edelmann, J., Hering, S., Kuhlisch, E., et al., 2002. Validation of the STR DXS7424 and the linkage situation on the X-chromosome. Forensic Sci. Int., 125(2-3):217-222.
[4]Edelmann, J., Hering, S., Augustin, C., et al., 2010. Validation of six closely linked STRs located in the chromosome X centromere region. Int. J. Legal Med., 124(1):83-87.
[5]Excoffier, L., Laval, G., Schneider, S., 2007. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online, 23(1):47-50.
[6]Jin, L., Chu, J.Y., 2006. The Genetic Diversity Study of the Chinese Nation. Shanghai Scientific & Technical Publishers, Shanghai, China, p.77-78 (in Chinese).
[7]Liu, Q.L., Lv, D.J., Wu, X.L., et al., 2008. Development of a five ChX STRs loci typing system. Int. J. Legal Med., 122(3):261-265.
[8]Luo, H.B., Ye, Y., Wang, Y.Y., et al., 2011. Characteristics of eight X-STR loci for forensic purposes in the Chinese population. Int. J. Legal Med., 125(1):127-131.
[9]Moreira, H., Costa, H., Tavares, F., et al., 2015. Genetic variation of 12 X-chromosomal STR loci in an East Timor sample. Int. J. Legal Med., 129(2):257-258.
[10]Nadeem, A., Babar, M.E., Hussain, M., et al., 2009. Development of pentaplex PCR and genetic analysis of X chromosomal STRs in Punjabi population of Pakistan. Mol. Biol. Rep., 36(7):1671-1675.
[11]Rosenberg, N.A., Pritchard, J.K., Weber, J.L., et al., 2002. Genetic structure of human populations. Science, 298(5602):2381-2385.
[12]Samejima, M., Nakamura, Y., Nambiar, P., et al., 2012. Genetic study of 12 X-STRs in Malay population living in and around Kuala Lumpur using Investigator Argus X-12 kit. Int. J. Legal. Med., 126(4):677-683.
[13]Shen, C.M., Zhu, B.F., Deng, Y.J., et al., 2010. Allele polymorphism and haplotype diversity of HLA-A, -B and -DRB1 loci in sequence-based typing for Chinese Uyghur ethnic group. PLoS ONE, 5(11):e13458.
[14]Shrivastava, P., Jain, T., Gupta, U., et al., 2015. Genetic polymorphism study on 12 X STR loci of investigator Argus X STR kit in Bhil tribal population of Madhya Pradesh, India. Leg. Med. (Tokyo), 17(3):214-217.
[15]Szibor, R., Hering, S., Kuhlisch, E., et al., 2005. Haplotyping of STR cluster DXS6801-DXS6809-DXS6789 on Xq21 provides a powerful tool for kinship testing. Int. J. Legal Med., 119(6):363-369.
[16]Tereba, A., 1999. Profiles in DNA 3, Tools for Analysis of Population Statistics, Promega Corporation. Available from http://www.promega.com/geneticidtools/powerstats [Accessed on July 1, 2015].
[17]Tomas, C., Pereira, V., Morling, N., 2012. Analysis of 12 X-STRs in Greenlanders, Danes and Somalis using Argus X-12. Int. J. Legal. Med., 126(1):121-128.
[18]Uchigasaki, S., Tie, J., Takahashi, D., 2013. Genetic analysis of twelve X-chromosomal STRs in Japanese and Chinese populations. Mol. Biol. Rep., 40(4):3193-3196.
[19]Walsh, P.S., Metzger, D.A., Higushi, R., 2013. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques, 54(3):134-139.
[20]Wang, H.D., Zhu, B.F., Shen, C.M., et al., 2012. Genetic polymorphism analysis of killer cell immunoglobulin-like receptor genes in the Chinese Uigur population. Mol. Biol. Rep., 39(3):3017-3028.
[21]Wang, H.D., Shen, C.M., Liu, W.J., et al., 2013. Allelic frequency distributions of 21 non-combined DNA index system STR loci in a Russian ethnic minority group from Inner Mongolia, China. J. Zhejiang Univ.-Sci. B (Biomed. & Biotechnol.), 14(6):533-540.
[22]Xu, X.F., 2003. The population scale and distrubution of Uigur. Northwest Population J., 4:46-48 (in Chinese).
[23]Zeng, X.P., Ren, Z., Chen, W.J., et al., 2011. Genetic polymorphisms of Investigator Argus X-12 amplification system in Guangdong Han population. Chin. J. Med. Genet., 28(2):230-234 (in Chinese).
[24]Zhang, S., Zhao, S., Zhu, R., et al., 2012. Genetic polymorphisms of 12 X-STR for forensic purposes in Shanghai Han population from China. Mol. Biol. Rep., 39(5):5705-5707.
[25]Zhu, B.F., Pan, F., Shen, C.M., et al., 2013. Population genetics and forensic efficiency of twenty-one novel microsatellite loci of Chinese Yi ethnic group. Electrophoresis, 34(24):3345-3351.
[26]Zhu, B.F., Zhang, Y.D., Liu, W.J., et al., 2014. Genetic diversity and haplotype structure of 24 Y-chromosomal STR in Chinese Hui ethnic group and its genetic relationships with other populations. Electrophoresis, 35(14):1993-2000.
[27]List of electronic supplementary materials
[28]Table S1 Haplotype diversities of seven clusters in Uygur male individuals (n=94)
[29]Table S2 Fst and P-values for allele frequency distribution between Uygur ethnic group and the other groups previously published
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