Journal of Zhejiang University SCIENCE B 2026 Vol.27 No.7 P.761-774

http://doi.org/10.1631/jzus.B2500787


Dual-functional nanoplatform for simultaneous degradation of circRNA CDR1as and real-time monitoring of miR-7 in live cells


Author(s):  Yan HUANG, Jialin YE, Lan XU, Xingjie HU, Nan CHEN

Affiliation(s):  1. College of Chemistry and Materials Science, The Education Ministry Key Lab of Resource Chemistry, Shanghai Engineering Research Center of Green Energy Chemical Engineering, and Shanghai Frontiers Science Center of Biomimetic Catalysis, Shanghai Normal University, Shanghai 200234, China more

Corresponding email(s):   nchen@shnu.edu.cn, huxingjie@shsmu.edu.cn

Key Words:  Circular RNA (circRNA), Zeolitic imidazolate framework-8 (ZIF-8), MicroRNA-7 (miR-7), DNAzyme, Gene regulation


Yan HUANG, Jialin YE, Lan XU, Xingjie HU, Nan CHEN. Dual-functional nanoplatform for simultaneous degradation of circRNA CDR1as and real-time monitoring of miR-7 in live cells[J]. Journal of Zhejiang University Science B, 2026, 27(7): 761-774.

@article{title="Dual-functional nanoplatform for simultaneous degradation of circRNA CDR1as and real-time monitoring of miR-7 in live cells",
author="Yan HUANG, Jialin YE, Lan XU, Xingjie HU, Nan CHEN",
journal="Journal of Zhejiang University Science B",
volume="27",
number="7",
pages="761-774",
year="2026",
publisher="Zhejiang University Press & Springer",
doi="10.1631/jzus.B2500787"
}

%0 Journal Article
%T Dual-functional nanoplatform for simultaneous degradation of circRNA CDR1as and real-time monitoring of miR-7 in live cells
%A Yan HUANG
%A Jialin YE
%A Lan XU
%A Xingjie HU
%A Nan CHEN
%J Journal of Zhejiang University SCIENCE B
%V 27
%N 7
%P 761-774
%@ 1673-1581
%D 2026
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.B2500787

TY - JOUR
T1 - Dual-functional nanoplatform for simultaneous degradation of circRNA CDR1as and real-time monitoring of miR-7 in live cells
A1 - Yan HUANG
A1 - Jialin YE
A1 - Lan XU
A1 - Xingjie HU
A1 - Nan CHEN
J0 - Journal of Zhejiang University Science B
VL - 27
IS - 7
SP - 761
EP - 774
%@ 1673-1581
Y1 - 2026
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.B2500787


Abstract: 
Circular RNAs (circRNAs) are key post-transcriptional regulators with critical roles in pathogenesis, yet existing tools for their precise manipulation and functional analysis in living cells remain to be developed. A compelling therapeutic target in this field is the circRNA cerebellar degeneration-related protein 1 antisense (CDR1as), functioning as an oncogenic sponge for microRNA-7 (miR-7). Herein, we report a novel multifunctional zeolitic imidazolate framework-8 (ZIF-8)-based nanoplatform for the simultaneous disruption and real-time monitoring of the CDR1as/miR-7 regulatory axis. This system, named DZ/MB@ZIF-8, co-encapsulates a designed set of DNAzymes (DZs) for the catalytic cleavage of CDR1as as well as a molecular beacon (MB) for reporting on miR-7 activity. Following cellular uptake and lysosomal trafficking, the acidic microenvironment triggers nanoplatform disassembly, concurrently releasing the therapeutic and sensing components along with essential Zn2+ cofactors for DZ activation. This system demonstrates efficient CDR1as degradation, which liberates miR-7 and inhibits the expression of its downstream oncogenic targets. Crucially, this therapeutic effect is directly correlated with a turn-on fluorescent signal from the MB, enabling the real-time, live-cell readout of circRNA regulation. This work establishes a versatile theranostic strategy that merges targeted gene regulation with intrinsic biosensing, offering a powerful platform for probing circRNA function and advancing RNA-based therapeutics.

活细胞内同步降解circRNA CDR1as并实时监测miR-7的双功能纳米平台

黄艳1,叶佳琳1,许岚1,胡兴杰2,陈楠1
1上海师范大学化学与材料科学学院,资源化学教育部重点实验室,上海绿色能源化工工程技术研究中心,上海市仿生催化前沿科学研究基地,中国上海,200234
2上海交通大学医学院公共卫生学院,中国上海,201318
摘要:环状RNA(circRNA)作为关键的转录后调控因子,在疾病发生发展中扮演着重要角色。然而,目前仍缺乏在活细胞层面对其进行精准操控与功能分析的有效工具。其中,circRNA CDR1as通过充当微小RNA-7(miR-7)的"分子海绵",成为极具潜力的治疗靶标。本研究构建了一种基于沸石咪唑酯骨架-8(ZIF-8)金属有机框架的多功能纳米平台,以实现对CDR1as/miR-7调控轴的双重干预和动态监测。该纳米系统(DZ/MB@ZIF-8)同时负载了特异性切割CDR1as的脱氧核酶(DNAzyme)和监测miR-7水平的分子信标(MB)探针。纳米颗粒被细胞内吞并转运至溶酶体后,酸性环境触发载体分解,同步释放治疗组分与传感元件,并原位提供DNAzyme活性必需的Zn2?辅因子。实验结果表明,该平台能有效降解CDR1as,释放被捕获的miR-7,并显著抑制下游致癌基因表达。值得注意的是,治疗效应与MB探针产生的"信号开启型"荧光呈现高度正相关性,首次实现了在活细胞内对circRNA调控网络的实时可视化追踪。综上所述,这项工作构建了基因靶向治疗与内源生物传感协同作用的普适性诊疗体系,为circRNA功能研究和RNA靶向治疗开发提供了创新技术平台。

关键词:环状RNA(circRNA);沸石咪唑酯骨架-8(ZIF-8);微小RNA-7(miR-7);脱氧核酶;基因调控

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article

Reference

[1]AgarwalV, BellGW, NamJW, et al., 2015. Predicting effective microRNA target sites in mammalian mRNAs. eLife, 4:e05005.

[2]Ashwal-FlussR, MeyerM, PamudurtiNR, et al., 2014. CircRNA biogenesis competes with pre-mRNA splicing. Mol Cell, 56(1):55-66.

[3]BehrM, ZhouJ, XuB, et al., 2021. In vivo delivery of CRISPR-Cas9 therapeutics: progress and challenges. Acta Pharm Sin B, 11(8):2150-2171.

[4]BloomerH, KhirallahJ, LiYM, et al., 2022. CRISPR/Cas9 ribonucleoprotein-mediated genome and epigenome editing in mammalian cells. Adv Drug Deliv Rev, 181:114087.

[5]BreuerJ, BarthP, NoeY, et al., 2022. What goes around comes around: artificial circular RNAs bypass cellular antiviral responses. Mol Ther Nucleic Acids, 28:623-635.

[6]Cepeda-PlazaM, PeracchiA, 2020. Insights into DNA catalysis from structural and functional studies of the 8-17 DNAzyme. Org Biomol Chem, 18(9):1697-1709.

[7]ChenH, MaoM, JiangJ, et al., 2019. Circular RNA CDR1as acts as a sponge of miR-135b-5p to suppress ovarian cancer progression. Onco Targets Ther, 12:3869-3879.

[8]ChenKD, XuYT, LiJX, et al., 2025. The potential and challenges of circular RNA in the development of vaccines and drugs for emerging infectious diseases. Mol Ther Nucleic Acids, 36(3):102687.

[9]FanSH, MaC, TianXP, et al., 2021. Detection of Vibrio vulnificus in seafood with a DNAzyme-based biosensor. Front Microbiol, 12:655845.

[10]FengC, CheXR, MaoCQ, et al., 2025. Enhanced DNAzyme-based tetrahedron amplifier for ultrasensitive determination and intracellular imaging of breast cancer-related microRNAs. ACS Sens, 10(11):8895-8905.

[11]GaoWY, HanXP, LiL, et al., 2025. Functionalized ZIF-8 as a versatile platform for drug delivery and cancer therapy: strategies, challenges and prospects. J Mater Chem B, 13(12):3758-3785.

[12]HansenTB, JensenTI, ClausenBH, et al., 2013. Natural RNA circles function as efficient microRNA sponges. Nature, 495(7441):384-388.

[13]JeckWR, SorrentinoJA, WangK, et al., 2013. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA, 19(2):141-157.

[14]LeeM, KangS, KimS, et al., 2023. Advances and trends in miRNA analysis using DNAzyme-based biosensors. Biosensors, 13(9):856.

[15]LiCC, XuTY, HouGP, et al., 2025. DNA nanotechnology-based strategies for gastric cancer diagnosis and therapy. Mater Today Bio, 30:101459.

[16]LiR, XuXJ, GaoS, et al., 2023. Circular RNA CDR1as mediated by human antigen R (HuR) promotes gastric cancer growth via miR-299-3p/TGIF1 axis. Cancers, 15(23):5556.

[17]LiuCX, ChenLL, 2022. Circular RNAs: characterization, cellular roles, and applications. Cell, 185(12):2016-2034.

[18]LiuQL, ZhangZ, WeiXW, et al., 2021. Noncoding RNAs in tumor metastasis: molecular and clinical perspectives. Cell Mol Life Sci, 78(21-22):6823-6850.

[19]LiuQW, HeY, XuWW, 2022. Molecular functions and therapeutic applications of exosomal noncoding RNAs in cancer. Exp Mol Med, 54(3):216-225.

[20]LiuRD, LiJX, SalenaBJ, et al., 2025. Aptamer and DNAzyme based colorimetric biosensors for pathogen detection. Angew Chem Int Ed, 64(4):e202418725.

[21]MaoXJ, CaoYY, GuoZJ, et al., 2021. Biological roles and therapeutic potential of circular RNAs in osteoarthritis. Mol Ther Nucleic Acids, 24:856-867.

[22]McConnellEM, CozmaI, MouQB, et al., 2021. Biosensing with DNAzymes. Chem Soc Rev, 50(16):8954-8994.

[23]MehtaSL, ChokkallaAK, BathulaS, et al., 2023. CDR1as regulates α-synuclein-mediated ischemic brain damage by controlling miR-7 availability. Mol Ther Nucleic Acids, 31:57-67.

[24]MengLJ, DingPA, LiuSH, et al., 2020. The emerging prospects of circular RNA in tumor immunity. Ann Transl Med, 8(17):1091.

[25]MishraNO, QuonAS, NguyenA, et al., 2023. Constructing physiological defense systems against infectious disease with metal–organic frameworks: a review. ACS Appl Bio Mater, 6(8):3052-3065.

[26]NurmiC, GuJ, MathaiA, et al., 2024. Making target sites in large structured RNAs accessible to RNA-cleaving DNAzymes through hybridization with synthetic DNA oligonucleotides. Nucleic Acids Res, 52(18):11177-11187.

[27]OdameE, LiL, NabillaJA, et al., 2023. miR-145-3p inhibits MuSCs proliferation and mitochondria mass via targeting MYBL1 in Jianzhou big-eared goats. Int J Mol Sci, 24(9):8341.

[28]PiweckaM, GlažarP, Hernandez-MirandaLR, et al., 2017. Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function. Science, 357(6357):eaam8526.

[29]RudaVM, ChandwaniR, SehgalA, et al., 2014. The roles of individual mammalian argonautes in RNA interference in vivo. PLoS One, 9(7):e101749.

[30]SantoroSW, JoyceGF, 1997. A general purpose RNA-cleaving DNA enzyme. Proc Natl Acad Sci USA, 94(9):4262-4266.

[31]SatoK, AkiyamaM, SakakibaraY, 2021. RNA secondary structure prediction using deep learning with thermodynamic integration. Nat Commun, 12:941.

[32]SchubertS, 2003. RNA cleaving ‘10-23’ DNAzymes with enhanced stability and activity. Nucleic Acids Res, 31(20):5982-5992.

[33]ShafaghatZ, RadmehrS, SaharkhizS, et al., 2025. Circular RNA, a molecule with potential chemistry and applications in RNA-based cancer therapeutics: an insight into recent advances. Top Curr Chem, 383(2):21.

[34]ShaoYC, XuJZ, LiangB, et al., 2023. The role of CDR1as/ciRS-7 in cardio-cerebrovascular diseases. Biomed Pharm, 167:115589.

[35]SinghRR, MondalI, JanjuaT, et al., 2024. Engineered smart materials for RNA based molecular therapy to treat Glioblastoma. Bioact Mater, 33:396-423.

[36]SongGX, TianCH, LiJH, et al., 2023. Rapid characterization of anti-CRISPR proteins and optogenetically engineered variants using a versatile plasmid interference system. Nucleic Acids Res, 51(22):12381-12396.

[37]TroyanoJ, Carné-SánchezA, AvciC, et al., 2019. Colloidal metal–organic framework particles: the pioneering case of ZIF-8. Chem Soc Rev, 48(23):5534-5546.

[38]VictorJ, StegerG, RiesnerD, 2018. Inability of DNAzymes to cleave RNA in vivo is due to limited Mg2+ concentration in cells. Eur Biophys J, 47(4):333-343.

[39]WangHM, ChenYQ, WangH, et al., 2019. DNAzyme-loaded metal–organic frameworks (MOFs) for self-sufficient gene therapy. Angew Chem Int Ed, 58(22):7380-7384.

[40]WangW, SunL, HuangMT, et al., 2023. Regulatory circular RNAs in viral diseases: applications in diagnosis and therapy. RNA Biol, 20(1):847-858.

[41]WeiKJ, HeMY, ZhangJ, et al., 2023. A DNA logic circuit equipped with a biological amplifier loaded into biomimetic ZIF-8 nanoparticles enables accurate identification of specific cancers in vivo. Angew Chem Int Ed, 62(41):e202307025.

[42]WightmanFF, LukinJ, GiustiSA, et al., 2024. Influence of RNA circularity on target RNA-directed microRNA degradation. Nucleic Acids Res, 52(6):3358-3374.

[43]WuD, LiuX, TangLJ, et al., 2024. Three-way junction-mediated three-letter coded SDA cascade CRISPR/Cas12a system for circRNA detection. Chem Eng J, 497:154542.

[44]WuSX, ZhangKX, LiangY, et al., 2022. Nano-enabled tumor systematic energy exhaustion via zinc (II) interference mediated glycolysis inhibition and specific GLUT1 depletion. Adv Sci, 9(7):2103534.

[45]XuB, YangTY, WangZ, et al., 2018. CircRNA CDR1as/miR-7 signals promote tumor growth of osteosarcoma with a potential therapeutic and diagnostic value. Cancer Manag Res, 10:4871-4880.

[46]XuC, XuYH, WangGM, 2025. Bibliometric analysis of research on cervical cancer and miRNAs from 2010 to 2024: research trends, hotspots, and prospects. Discov Oncol, 16:1639.

[47]YangJ, MengXD, PanJC, et al., 2018. CRISPR/Cas9-mediated noncoding RNA editing in human cancers. RNA Biol, 15(1):35-43.

[48]YangXQ, YeT, LiuHR, et al., 2021. Expression profiles, biological functions and clinical significance of circRNAs in bladder cancer. Mol Cancer, 20:4.

[49]YeJC, XieC, WangCL, et al., 2021. Promoting musculoskeletal system soft tissue regeneration by biomaterial-mediated modulation of macrophage polarization. Bioact Mater, 6(11):4096-4109.

[50]YuH, ZhaoQ, 2023. DNAzyme-based microscale thermophoresis sensor. Anal Chem, 95(4):2152-2156.

[51]ZengZH, ZhongMZ, LiaoT, et al., 2024. Nano-fuels-driven self-sacrificed ZIF-8@Apt integrated chip coupled with a DNAzyme system for the isolation and detection of glioblastoma-derived extracellular vesicles. Chem Eng J, 502:157445.

[52]ZhangXY, LiuQB, ZhangTT, et al., 2022. Bone-targeted nanoplatform enables efficient modulation of bone tumor microenvironment for prostate cancer bone metastasis treatment. Drug Deliv, 29(1):889-905.

[53]ZhangYJ, HuangXW, WangLS, et al., 2021. Glutathionylation-dependent proteasomal degradation of wide-spectrum mutant p53 proteins by engineered zeolitic imidazolate framework-8. Biomaterials, 271:120720.

[54]ZhangYT, HuJP, QuXY, et al., 2023. Circular RNA RSU1 promotes retinal vascular dysfunction by regulating miR-345-3p/TAZ. Commun Biol, 6:719.

[55]ZhaoX, ChengH, WangQW, et al., 2023. Regulating photosensitizer metabolism with DNAzyme-loaded nanoparticles for amplified mitochondria-targeting photodynamic immunotherapy. ACS Nano, 17(14):13746-13759.

[56]ZukerM, 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res, 31(13):3406-3415.

Open peer comments: Debate/Discuss/Question/Opinion

<1>

Please provide your name, email address and a comment





Full Text:   <544>

Summary:  <50>

Suppl. Mater.: 

CLC number: 

On-line Access: 2026-07-29

Received: 2025-12-01

Revision Accepted: 2026-04-08

Crosschecked: 2026-07-29

Cited: 0

Clicked: 492

Citations:  Bibtex RefMan EndNote GB/T7714

 ORCID:

Nan CHEN

https://orcid.org/0000-0001-8536-6631

Xingjie HU

https://orcid.org/0000-0002-0271-3843

Journal of Zhejiang University-SCIENCE, 38 Zheda Road, Hangzhou 310027, China
Tel: +86-571-87952783; E-mail: cjzhang@zju.edu.cn
Copyright © 2000 - 2026 Journal of Zhejiang University-SCIENCE