Full Text:   <2591>

CLC number: R722 13

On-line Access: 2024-08-27

Received: 2023-10-17

Revision Accepted: 2024-05-08

Crosschecked: 0000-00-00

Cited: 0

Clicked: 5492

Citations:  Bibtex RefMan EndNote GB/T7714

-   Go to

Article info.
Open peer comments

Journal of Zhejiang University SCIENCE A 2000 Vol.1 No.2 P.222-226

http://doi.org/10.1631/jzus.2000.0222


DETECTION OF BACTERIAL DNA BY PCR AND REVERSE HYBRIDIZATION IN THE 16s rRNA GENE


Author(s):  SHANG Shi-qiang, YU Xi-lin, HONG Wen-lan, YU Hui-min, SUN Mei-yue

Affiliation(s):  Dept. of Neonatology, Children's Hospital of Zhejiang University, Hangzhou 310003, China

Corresponding email(s):   YeZH@mail.hz.zj.cn

Key Words:  16s, rDNA, rRNA PCR, bacterial infection, hybridization, neonate


Share this article to: More

SHANG Shi-qiang, YU Xi-lin, HONG Wen-lan, YU Hui-min, SUN Mei-yue. DETECTION OF BACTERIAL DNA BY PCR AND REVERSE HYBRIDIZATION IN THE 16s rRNA GENE[J]. Journal of Zhejiang University Science A, 2000, 1(2): 222-226.

@article{title="DETECTION OF BACTERIAL DNA BY PCR AND REVERSE HYBRIDIZATION IN THE 16s rRNA GENE",
author="SHANG Shi-qiang, YU Xi-lin, HONG Wen-lan, YU Hui-min, SUN Mei-yue",
journal="Journal of Zhejiang University Science A",
volume="1",
number="2",
pages="222-226",
year="2000",
publisher="Zhejiang University Press & Springer",
doi="10.1631/jzus.2000.0222"
}

%0 Journal Article
%T DETECTION OF BACTERIAL DNA BY PCR AND REVERSE HYBRIDIZATION IN THE 16s rRNA GENE
%A SHANG Shi-qiang
%A YU Xi-lin
%A HONG Wen-lan
%A YU Hui-min
%A SUN Mei-yue
%J Journal of Zhejiang University SCIENCE A
%V 1
%N 2
%P 222-226
%@ 1869-1951
%D 2000
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.2000.0222

TY - JOUR
T1 - DETECTION OF BACTERIAL DNA BY PCR AND REVERSE HYBRIDIZATION IN THE 16s rRNA GENE
A1 - SHANG Shi-qiang
A1 - YU Xi-lin
A1 - HONG Wen-lan
A1 - YU Hui-min
A1 - SUN Mei-yue
J0 - Journal of Zhejiang University Science A
VL - 1
IS - 2
SP - 222
EP - 226
%@ 1869-1951
Y1 - 2000
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.2000.0222


Abstract: 
The clinical diagnosis of sepsis is difficult, particularly in neonates. To devise a rapid and reliable method for identifying bacteria in blood and cerebrospinal fluid (CSF), we developed a pair of primers according to the gene encoding 16 s rRNA, found in all bacteria. DNA fragments from different bacterial species and from clinical samples were detected with polymerase chain reaction (PCR), and with reverse hybridization using a universal bacterial probe, a gram-positive probe and a gram-negative probe. Our results showed that a 371 bp DNA fragment was amplified from 20 different bacterial species. No signal was observed when human DNA and viruses were used as templates. The sensitivity could be improved to 10-12 g. All 26 culture-positive clinical samples (22 blood samples and 4 CSF samples), were positive with PCR. The gram-negative and gram-positive probe hybridized to clinical samples and to known bacterial controls, as predicted by Gram

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article

Reference

[1]Angert, E.R., Clements, K.D., Pace, N.R., 1993. The largest bacterium. Nature, 362: 239-241.

[2]Baker, M.D., Avner, J.R., Bell, L.M., 1990. Failure of infant observation scales in detecting serious illness in febrile 4 to 8 week old infants. Pediatrics, 85: 1040-1043.

[3]Jones, R.G., Bass, J.W., 1993. Febrile children with no focus of infection; a survey of their management by primary care physicians. Pediatr infect Dis J. 12: 179-183.

[4]Mccabe, K.M., Khan, G., Yao-Hua T., et al. 1995. Amplification of bacterial DNA using highly conserved sequences: automated analysis and potential for molecular triage of sepsis. Pediatrics, 95: 165-169.

[5]Relman, D.A., 1993. The identification of uncultured microbial pathogens (review). J Infect Dis, 168: 1-8.

[6]Riffard, S., Presti, L.F., Normand, P., et al. 1993. Species identification of legionella via intergenic 16s-23s ribosomal spacer PCR analysis. Int J Syst Bacteriol, 48pt 3: 723-30.

[7]Saruta K., Hoshina, S., Machida, K., 1995. Genetic identification of staphylococcus aureus by polymerase chain reaction using single-base-pair mismatch in 16s ribosomal RNA gene. Microbiol Immunol, 39(11): 839-844.

[8]Shirai, H., Nishibuchi, M., Ramamurthy, T., 1991. Polymerase chain reaction for detection of the cholera enterotoxin operon of vibrio cholerae. J Clin Microbiol, 29:2517-2521.

Open peer comments: Debate/Discuss/Question/Opinion

<1>

Please provide your name, email address and a comment





Journal of Zhejiang University-SCIENCE, 38 Zheda Road, Hangzhou 310027, China
Tel: +86-571-87952783; E-mail: cjzhang@zju.edu.cn
Copyright © 2000 - 2024 Journal of Zhejiang University-SCIENCE