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Journal of Zhejiang University SCIENCE A 2006 Vol.7 No.9 P.1492-1499


Parameter selection of pocket extraction algorithm using interaction interface

Author(s):  KIM Chong-Min, WON Chung-In, RYU Joonghyun, CHO Cheol-Hyung, BHAK Jonghwa, KIM Deok-Soo

Affiliation(s):  Department of Industrial Engineering, Hanyang University, Seoul 133-791, Korea; more

Corresponding email(s):   dskim@hanyang.ac.kr

Key Words:  Pocket, Protein, Interaction interface, Protein interaction, Voronoi diagram

KIM Chong-Min, WON Chung-In, RYU Joonghyun, CHO Cheol-Hyung, BHAK Jonghwa, KIM Deok-Soo. Parameter selection of pocket extraction algorithm using interaction interface[J]. Journal of Zhejiang University Science A, 2006, 7(9): 1492-1499.

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publisher="Zhejiang University Press & Springer",

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%A KIM Chong-Min
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%A RYU Joonghyun
%A CHO Cheol-Hyung
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%A KIM Deok-Soo
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%I Zhejiang University Press & Springer
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T1 - Parameter selection of pocket extraction algorithm using interaction interface
A1 - KIM Chong-Min
A1 - WON Chung-In
A1 - RYU Joonghyun
A1 - CHO Cheol-Hyung
A1 - BHAK Jonghwa
A1 - KIM Deok-Soo
J0 - Journal of Zhejiang University Science A
VL - 7
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SP - 1492
EP - 1499
%@ 1673-565X
Y1 - 2006
PB - Zhejiang University Press & Springer
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DOI - 10.1631/jzus.2006.A1492

pockets in proteins have been known to be very important for the life process. There have been several studies in the past to automatically extract the pockets from the structure information of known proteins. However, it is difficult to find a study comparing the precision of the extracted pockets from known pockets on the protein. In this paper, we propose an algorithm for extracting pockets from structure data of proteins and analyze the quality of the algorithm by comparing the extracted pockets with some known pockets. These results in this paper can be used to set the parameter values of the pocket extraction algorithm for getting better results.

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article


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