Full Text:   <2639>

Summary:  <1831>

CLC number: R774

On-line Access: 2024-08-27

Received: 2023-10-17

Revision Accepted: 2024-05-08

Crosschecked: 2017-04-18

Cited: 0

Clicked: 4907

Citations:  Bibtex RefMan EndNote GB/T7714

-   Go to

Article info.
Open peer comments

Journal of Zhejiang University SCIENCE B 2017 Vol.18 No.5 P.421-429

http://doi.org/10.1631/jzus.B1600156


Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis


Author(s):  Yun Li, Qing Pan, Yang-shun Gu

Affiliation(s):  Department of Ophthalmology, the First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou 310003, China; more

Corresponding email(s):   guyangshun_1@hotmail.com

Key Words:  Leber congenital amaurosis, Phenotype-genotype correlation, RDH12, Compound heterozygosity


Yun Li, Qing Pan, Yang-shun Gu. Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis[J]. Journal of Zhejiang University Science B, 2017, 18(5): 421-429.

@article{title="Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis",
author="Yun Li, Qing Pan, Yang-shun Gu",
journal="Journal of Zhejiang University Science B",
volume="18",
number="5",
pages="421-429",
year="2017",
publisher="Zhejiang University Press & Springer",
doi="10.1631/jzus.B1600156"
}

%0 Journal Article
%T Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis
%A Yun Li
%A Qing Pan
%A Yang-shun Gu
%J Journal of Zhejiang University SCIENCE B
%V 18
%N 5
%P 421-429
%@ 1673-1581
%D 2017
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.B1600156

TY - JOUR
T1 - Phenotype-genotype correlation with Sanger sequencing identified retinol dehydrogenase 12 (RDH12) compound heterozygous variants in a Chinese family with Leber congenital amaurosis
A1 - Yun Li
A1 - Qing Pan
A1 - Yang-shun Gu
J0 - Journal of Zhejiang University Science B
VL - 18
IS - 5
SP - 421
EP - 429
%@ 1673-1581
Y1 - 2017
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.B1600156


Abstract: 
Background: leber congenital amaurosis (LCA) is a group of clinically and genetically heterogeneous retinal dystrophy. To date, 22 genes are known to be responsible for LCA, and some specific phenotypic features could provide significant prognostic information for a potential genetic etiology. This study is to identify gene variants responsible for LCA in a Chinese family using direct Sanger sequencing, with the help of phenotype-genotype correlations. Methods: A Chinese family with six members including two individuals affected with LCA was studied. All patients underwent a complete ophthalmic examination. Based on phenotype-genotype correlation, direct Sanger sequencing was performed to identify the candidate gene on all family members and normal controls. Targeted next-generation sequencing was used to exclude other known LCA genes. Results: By Sanger sequencing, we identified two novel missense variants in the retinol dehydrogenase 12 (RDH12) gene: a c.164C>A transversion predicting a p.T55K substitution, and a c.535C>G transversion predicting a p.H179D substitution. The two affected subjects carried both RDH12 variants, while their parents and offspring carried only one of heterozygous variants, showing complete cosegregation of the variants. The compound heterozygous variants were not present in 600 normal controls. Besides, the RDH12 variants were confirmed by targeted next-generation sequencing. Conclusions: The RDH12 compound heterozygous variants might be the cause of the LCA family. Our study adds to the molecular spectrum of RDH12-related retinopathy and offers an effective example of the power of phenotype-genotype correlations in molecular diagnosis of LCA.

临床表型-基因型关联发现Leber先天性黑矇(LCA)家系新的RDH12基因复合杂合突变

目的:临床表型-基因型关联分析筛查Leber先天性黑矇(LCA)家系候选基因,确定其分子遗传病因。
创新点:成功应用临床表型-基因型关联分析鉴定LCA家系致病基因,并发现新的RDH12基因复合杂合突变。
方法:收集一个中国常染色体隐性遗传三代LCA家系,详细分析该家系眼部表型特征(图1和表1),经临床表型-基因型关联分析确定RDH12为候选基因。Sanger测序发现新的RDH12基因复合杂合突变(图2),目标序列捕获高通量测序技术排除其他已知LCA相关基因(表2)。该家系成员基因型显示完整的共分离(图3),同时在600例普通人群中未发现该突变。
结论:RDH12基因复合杂合突变可能为该LCA家系的致病基因,临床表型-基因型关联分析在LCA分子遗传学诊断中有重要价值。

关键词:Leber先天性黑矇;临床表型-基因型关联;RDH12;复合杂合突变

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article

Reference

[1]Adzhubei, I.A., Schmidt, S., Peshkin, L., et al., 2010. A method and server for predicting damaging missense mutations. Nat. Methods, 7(4):248-249.

[2]Bujakowska, K., Audo, I., Mohand-Said, S., et al., 2012. CRB1 mutations in inherited retinal dystrophies. Hum. Mutat., 33(2):306-315.

[3]Chacon-Camacho, O.F., Zenteno, J.C., 2015. Review and update on the molecular basis of Leber congenital amaurosis. World J. Clin. Cases, 3(2):112-124.

[4]Chrispell, J.D., Feathers, K.L., Kane, M.A., et al., 2009. Rdh12 activity and effects on retinoid processing in the murine retina. J. Biol. Chem., 284(32):21468-21477.

[5]Chung, D.C., Traboulsi, E.I., 2009. Leber congenital amaurosis: clinical correlations with genotypes, gene therapy trials update, and future directions. J. AAPOS, 13(6): 587-592.

[6]den Hollander, A.I., Koenekoop, R.K., Yzer, S., et al., 2006. Mutations in the CEP290 (NPHP6) gene are a frequent cause of Leber congenital amaurosis. Am. J. Hum. Genet., 79(3):556-561.

[7]den Hollander, A.I., Roepman, R., Koenekoop, R.K., et al., 2008. Leber congenital amaurosis: genes, proteins and disease mechanisms. Prog. Retin. Eye Res., 27(4):391-419.

[8]Dharmaraj, S.R., Silva, E.R., Pina, A.L., et al., 2000. Mutational analysis and clinical correlation in Leber congenital amaurosis. Ophthalmic Genet., 21(3):135-150.

[9]Estrada-Cuzcano, A., Koenekoop, R.K., Coppieters, F., et al., 2011. IQCB1 mutations in patients with Leber congenital amaurosis. Invest. Ophthalmol. Vis. Sci., 52(2):834-839.

[10]Gong, B., Wei, B., Huang, L., et al., 2015. Exome sequencing identified a recessive RDH12 mutation in a family with severe early-onset retinitis pigmentosa. J. Ophthalmol., 2015:942740.

[11]Haeseleer, F., Jang, G.F., Imanishi, Y., et al., 2002. Dual-substrate specificity short chain retinol dehydrogenases from the vertebrate retina. J. Biol. Chem., 277(47):45537-45546.

[12]Hong, N., Chen, Y., Xie, C., et al., 2014. Identification of a novel mutation in a Chinese family with Nance-Horan syndrome by whole exome sequencing. J. Zhejiang Univ.-Sci. B (Biomed. & Biotechnol.), 15(8):727-734.

[13]Jacobson, S.G., Cideciyan, A.V., Aleman, T.S., et al., 2007. RDH12 and RPE65, visual cycle genes causing Leber congenital amaurosis, differ in disease expression. Invest. Ophthalmol. Vis. Sci., 48(1):332-338.

[14]Jacobson, S.G., Cideciyan, A.V., Peshenko, I.V., et al., 2013. Determining consequences of retinal membrane guanylyl cyclase (RetGC1) deficiency in human Leber congenital amaurosis en route to therapy: residual cone-photoreceptor vision correlates with biochemical properties of the mutants. Hum. Mol. Genet., 22(1):168-183.

[15]Janecke, A.R., Thompson, D.A., Utermann, G., et al., 2004. Mutations in RDH12 encoding a photoreceptor cell retinol dehydrogenase cause childhood-onset severe retinal dystrophy. Nat. Genet., 36(8):850-854.

[16]Kiser, P.D., Golczak, M., Maeda, A., et al., 2012. Key enzymes of the retinoid (visual) cycle in vertebrate retina. Biochim. Biophys. Acta, 1821(1):137-151.

[17]Koenekoop, R.K., 2004. An overview of Leber congenital amaurosis: a model to understand human retinal development. Surv. Ophthalmol., 49(4):379-398.

[18]Kolandaivelu, S., Ramamurthy, V., 2014. AIPL1 protein and its indispensable role in cone photoreceptor function and survival. Adv. Exp. Med. Biol., 801:43-48.

[19]Kuniyoshi, K., Sakuramoto, H., Yoshitake, K., et al., 2014. Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation. Doc. Ophthalmol., 128(3): 219-228.

[20]Kurth, I., Thompson, D.A., Ruther, K., et al., 2007. Targeted disruption of the murine retinal dehydrogenase gene Rdh12 does not limit visual cycle function. Mol. Cell. Biol., 27(4):1370-1379.

[21]Li, H., 2011. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27(21):2987-2993.

[22]Li, H., Durbin, R., 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25(14):1754-1760.

[23]Lin, F., Huang, Z., Lu, N., et al., 2014. Controversial opinion: evaluation of EGR1 and LAMA2 loci for high myopia in Chinese populations. J. Zhejiang Univ. Sci.-B (Biomed. & Biotechnol.), 17(3):225-235.

[24]Mackay, D.S., Dev, B.A., Moradi, P., et al., 2011. RDH12 retinopathy: novel mutations and phenotypic description. Mol. Vis., 17:2706-2716.

[25]Maeda, A., Maeda, T., Imanishi, Y., et al., 2006. Retinol dehydrogenase (RDH12) protects photoreceptors from light-induced degeneration in mice. J. Biol. Chem., 281(49):37697-37704.

[26]Maeda, A., Maeda, T., Sun, W., et al., 2007. Redundant and unique roles of retinol dehydrogenases in the mouse retina. Proc. Natl. Acad. Sci. USA, 104(49):19565-19570.

[27]McKenna, A., Hanna, M., Banks, E., et al., 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20(9):1297-1303.

[28]Milam, A.H., Barakat, M.R., Gupta, N., et al., 2003. Clinicopathologic effects of mutant GUCY2D in Leber congenital amaurosis. Ophthalmology, 110(3):549-558.

[29]Ng, P.C., Henikoff, S., 2003. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res., 31(13):3812-3814.

[30]Pasadhika, S., Fishman, G.A., Stone, E.M., et al., 2010. Differential macular morphology in patients with RPE65-, CEP290-, GUCY2D-, and AIPL1-related Leber congenital amaurosis. Invest. Ophthalmol. Vis. Sci., 51(5):2608-2614.

[31]Perrault, I., Hanein, S., Gerber, S., et al., 2004. Retinal dehydrogenase 12 (RDH12) mutations in Leber congenital amaurosis. Am. J. Hum. Genet., 75(4):639-646.

[32]Perrault, I., Hanein, S., Zanlonghi, X., et al., 2012. Mutations in NMNAT1 cause Leber congenital amaurosis with early-onset severe macular and optic atrophy. Nat. Genet., 44(9):975-977.

[33]Schuster, A., Janecke, A.R., Wilke, R., et al., 2007. The phenotype of early-onset retinal degeneration in persons with RDH12 mutations. Invest. Ophthalmol. Vis. Sci., 48(4): 1824-1831.

[34]Sergouniotis, P.I., Davidson, A.E., Mackay, D.S., et al., 2011. Recessive mutations in KCNJ13, encoding an inwardly rectifying potassium channel subunit, cause Leber congenital amaurosis. Am. J. Hum. Genet., 89(1):183-190.

[35]Sherwin, J.C., Hewitt, A.W., Ruddle, J.B., et al., 2008. Genetic isolates in ophthalmic diseases. Ophthalmic Genet., 29(4): 149-161.

[36]Sodi, A., Caputo, R., Passerini, I., et al., 2010. Novel RDH12 sequence variations in Leber congenital amaurosis. J. AAPOS, 14(4):349-351.

[37]Stone, E.M., 2007. Leber congenital amaurosis—a model for efficient genetic testing of heterogeneous disorders: LXIV Edward Jackson Memorial Lecture. Am. J. Ophthalmol., 144(6):791-811.

[38]Tan, M.H., Mackay, D.S., Cowing, J., et al., 2012. Leber congenital amaurosis associated with AIPL1: challenges in ascribing disease causation, clinical findings, and implications for gene therapy. PLoS ONE, 7(3):e32330.

[39]Testa, F., Surace, E.M., Rossi, S., et al., 2011. Evaluation of Italian patients with Leber congenital amaurosis due to AIPL1 mutations highlights the potential applicability of gene therapy. Invest. Ophthalmol. Vis. Sci., 52(8):5618-5624.

[40]Traboulsi, E.I., 2010. The Marshall M. Parks memorial lecture: making sense of early-onset childhood retinal dystrophies— the clinical phenotype of Leber congenital amaurosis. Br. J. Ophthalmol., 94(10):1281-1287.

[41]Valverde, D., Pereiro, I., Vallespin, E., et al., 2009. Complexity of phenotype-genotype correlations in Spanish patients with RDH12 mutations. Invest. Ophthalmol. Vis. Sci., 50(3):1065-1068.

[42]Wang, H., Wang, X., Zou, X., et al., 2015. Comprehensive molecular diagnosis of a large Chinese Leber congenital amaurosis cohort. Invest. Ophthalmol. Vis. Sci., 56(6): 3642-3655.

[43]Xu, Y., Xiao, X., Li, S., et al., 2016. Molecular genetics of Leber congenital amaurosis in Chinese: new data from 66 probands and mutation overview of 159 probands. Exp. Eye Res., 149:93-99.

[44]Ye, K., Schulz, M.H., Long, Q., et al., 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics, 25(21):2865-2871.

[45]Yucel-Yilmaz, D., Tarlan, B., Kiratli, H., et al., 2014. Genome-wide homozygosity mapping in families with Leber congenital amaurosis identifies mutations in AIPL1 and RDH12 genes. DNA Cell Biol., 33(12):876-883.

[46]Yzer, S., Hollander, A.I., Lopez, I., et al., 2012. Ocular and extra-ocular features of patients with Leber congenital amaurosis and mutations in CEP290. Mol. Vis., 18:412-425.

Open peer comments: Debate/Discuss/Question/Opinion

<1>

Please provide your name, email address and a comment





Journal of Zhejiang University-SCIENCE, 38 Zheda Road, Hangzhou 310027, China
Tel: +86-571-87952783; E-mail: cjzhang@zju.edu.cn
Copyright © 2000 - 2024 Journal of Zhejiang University-SCIENCE