Full Text:   <3110>

CLC number: Q939

On-line Access: 2024-08-27

Received: 2023-10-17

Revision Accepted: 2024-05-08

Crosschecked: 0000-00-00

Cited: 41

Clicked: 5420

Citations:  Bibtex RefMan EndNote GB/T7714

-   Go to

Article info.
Open peer comments

Journal of Zhejiang University SCIENCE B 2008 Vol.9 No.10 P.842-846

http://doi.org/10.1631/jzus.B0860004


Epitypification: should we epitypify?


Author(s):  Kevin D. HYDE, Ying ZHANG

Affiliation(s):  International Fungal Research and Development Centre, the Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming 650224, China; more

Corresponding email(s):   kdhyde1@gmail.com

Key Words:  Colletotrichum, GenBank, Molecular phylogeny, Taxonomy, Typification


Share this article to: More <<< Previous Article|

Kevin D. HYDE, Ying ZHANG. Epitypification: should we epitypify?[J]. Journal of Zhejiang University Science B, 2008, 9(10): 842-846.

@article{title="Epitypification: should we epitypify?",
author="Kevin D. HYDE, Ying ZHANG",
journal="Journal of Zhejiang University Science B",
volume="9",
number="10",
pages="842-846",
year="2008",
publisher="Zhejiang University Press & Springer",
doi="10.1631/jzus.B0860004"
}

%0 Journal Article
%T Epitypification: should we epitypify?
%A Kevin D. HYDE
%A Ying ZHANG
%J Journal of Zhejiang University SCIENCE B
%V 9
%N 10
%P 842-846
%@ 1673-1581
%D 2008
%I Zhejiang University Press & Springer
%DOI 10.1631/jzus.B0860004

TY - JOUR
T1 - Epitypification: should we epitypify?
A1 - Kevin D. HYDE
A1 - Ying ZHANG
J0 - Journal of Zhejiang University Science B
VL - 9
IS - 10
SP - 842
EP - 846
%@ 1673-1581
Y1 - 2008
PB - Zhejiang University Press & Springer
ER -
DOI - 10.1631/jzus.B0860004


Abstract: 
Epitypification can solve many taxonomic problems and stabilize the understanding of species, genera, families or orders. The aim of this paper is to illustrate how to epitypify. A few examples where taxa have been epitypified are considered and the benefits and disadvantages of epitypification are discussed. We also outline some examples of taxa which need to be epitypified with reasons.

Darkslateblue:Affiliate; Royal Blue:Author; Turquoise:Article

Reference

[1] Aime, M.C., Matheny, P.B., Henk, D.A., Frieders, E.M., Nilsson, R.H., Piepenbring, M., McLaughlin, D.J., Szabo, L.J., Begerow, D., Sampaio, J.P., et al., 2006. An overview of the higher-level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia, 98(6):896-905.

[2] Alves, A., Crous, P.W., Correia, A., Phillips, A.J.L., 2008. Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. Fungal Diversity, 28(1):1-13.

[3] Binder, M., Hibbett, D.S., 2006. Molecular systematics and biological diversification of Boletales. Mycologia, 98(6):971-983.

[4] Boise, J.R., 1985. An amended description of Trematosphaeria. Mycologia, 77(2):230-237.

[5] Celio, G.J., Padamsee, M., Dentinger, B.T.M., Bauer, R., McLaughlin, D.J., 2006. Assembling the fungal tree of life: constructing the structural and biochemical database. Mycologia, 98(6):850-859.

[6] Crous, P.W., Braun, U., Groenewald, J.Z., 2007. Mycosphaerella is polyphyletic. Studies in Mycology, 58(1):1-32.

[7] Eriksson, O., 1982. The families of bitunicate ascomycetes. Opera Botanica, 60:1-220.

[8] Fredricks, D.N., Smith, C., Meier, A., 2005. Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR. Journal of Clinical Microbiology, 43(10):5122-5128.

[9] Geiser, D., Gueidan, M., Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Schoch, C.L., Tibell, L., Untereiner, W.A., Aptroot, A., et al., 2006. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia, 98(6):1053-1064.

[10] Guerber, J.C., Correll, J.C., 2001. Characterization of Glomerella acutata the teleomorph of Colletotrichum acutatum. Mycologia, 93(1):216-229.

[11] Guerber, J.C., Liu, B., Correll, J.C., Johnston, P.R., 2003. Characterization of diversity in Colletotrichum acutatum sensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia, 95(5):872-895.

[12] Hawksworth, D.L., 1994. Ascomycete Systematics: Problems and Perspectives in the Nineties. Plenum Press, New York.

[13] Hibbett, D.S., Binder, M., Bischoff, J.F., Blackwell, M., Cannon, P.F., Eriksson, O.E., Huhndorf, S., James, T.Y., Kirk, P.M., Lucking, R., et al., 2007. A higher-level phylogenetic classification of the fungi. Mycological Research, 111(5):509-547.

[14] Kodsueb, R., Jeewon, R., Vijaykrishna, D., McKenzie, E.H.C., Lumyong, P., Lumyong, S., Hyde, K.D., 2006. Systematic revision of Tubeufiaceae based on morphological and molecular data. Fungal Diversity, 21:105-130.

[15] MacKenzie, S.J., Peres, N.A., Barquero, M.P., Arauz, L.F., Timmer, L.W., 2008. Host range and genetic relatedness of Colletotrichum acutatum isolates from fruit crops and leatherleaf fern in Florida. Phytopathology, in press.

[16] Mcneill, J., Barrie, F.R., Burdet, H.M., Demoulin, V., Hawksworth, D.L., Marhold, K., Nicolson, D.H., Prado, J., Silva, P.C., Skog, J.E., et al., 2006. International Code of Botanical Nomenclature (Vienna Code). Available from http://ibot.sav.sk/icbn/main.htm (Accessed Aug. 2008)

[17] Nilsson, R.H., Ryberg, M., Kristiansson, E., Abarenkov, K., Larsson, K.H., Kolgalg, U., 2006. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. PLoS ONE, 1(1):e59.

[18] O′Gorman, D.T., Sholberg, P.L., Stokes, S.C., Ginns, J., 2008. DNA sequence analysis of herbarium specimens facilitates the revival of Botrytis mali, a postharvest pathogen of apple. Mycologia, 100(2):227-235.

[19] Peres, N.A., MacKenzie, S.J., Peever, T.L., Timmer, L.W., 2008. Postbloom fruit drop of citrus and key lime anthracnose are caused by distinct phylogenetic lineages of Colletotrichum acutatum. Phytopathology, 98(3):345-352.

[20] Phillips, A.J.L., Oudemans, P.V., Correia, A., Alves, A., 2006. Characterisation and epitypification of Botryosphaeria corticis, the cause of blueberry cane canker. Fungal Diversity, 21:141-155.

[21] Phillips, A.J.L., Crous, P.W., Alves, A., 2007. Diplodia seriata, the anamorph of “Botryosphaeriaobtusa. Fungal Diversity, 25:141-155.

[22] Shenoy, B.D., Jeewon, R., Hyde, K.D., 2007a. Impact of DNA sequence-data on the taxonomy of anamorphic fungi. Fungal Diversity, 26:1-54.

[23] Shenoy, B.D., Jeewon, R., Lam, W.H. Bhat, D.J., Than, P.P., Talor, W.J., Hyde, K.D., 2007b. Morpho-molecular characterisation and epitypification of Colletotrichum capsici (Glomerellaceae, Sordariomycetes), the causative agent of anthracnose in chilli. Fungal Diversity, 27:197-211.

[24] Shoemaker, R.A., LeClair, P.M., 1975. Type studies of Massaria from Wehmeyer collection. Canadian Journal of Botany, 53(15):1568-1598.

[25] Shoemaker, R.A., Kokko, E.G., 1977. Fungi Canadenses No. 104. Massaria inquinans.

[26] Simmonds, J.H., 1965. A study of the species of Colletotrichum causing fruit rots in Queensland. Queensland Journal of Agriculture and Animal Science, 22:437-459.

[27] Simmonds, J.H., 1968. Type specimens of Colletotrichum gloeosporioides var. minor and Colletotrichum acutatum. Queensland Journal of Agriculture and Animal Science, 25:178A.

[28] Than, P.P., Shivas, R.G., Jeewon, R., Pongsupasamit, S., Marney, T.S., Taylor, P.W.J., Hyde, K.D., 2008. Epitypification and phylogeny of Colletotrichum acutatum J.H. Simmonds. Fungal Diversity, 28:97-108.

[29] Verkley, G.J.M., Crous, P.W., Groenewald, J.Z., Braun, U., Aptroot, A., 2004. Mycosphaerella punctiformis revisited: morphology, phylogeny, and epitypification of the type species of the genus Mycosphaerella (Dothideales, Ascomycota). Mycol. Res., 108(11):1271-1282.

[30] Walker, J.C., 1925. Studies on disease resistance in the onion. The Proceedings of the National Academy of Sciences, 11(3):183-189.

[31] Went, F.A.F.C., 1893. Het rood snot. Arch. Java Suikerindustr., 1:265-282 (in Dutch).

[32] Zhang, Y., Fournier, J., Hyde, K.D., 2008. Are Melanomma pulvis-pyrius and Trematosphaeria pertusa congeneric? Fungal Diversity, in press.

Open peer comments: Debate/Discuss/Question/Opinion

<1>

Please provide your name, email address and a comment





Journal of Zhejiang University-SCIENCE, 38 Zheda Road, Hangzhou 310027, China
Tel: +86-571-87952783; E-mail: cjzhang@zju.edu.cn
Copyright © 2000 - 2024 Journal of Zhejiang University-SCIENCE